Projects
Innovations at the Intersection of Neuroscience and Technology
Welcome to my projects portfolio. Here you’ll discover how I’m leveraging technology to advance neuroscience research and solve complex problems.
Featured Projects
AutoSlide
A semi-supervised machine vision pipeline for calculating interstitial fibrosis from histological samples. This project has revolutionized our lab’s analysis workflow, reducing processing time by 80% while maintaining high accuracy.
BlechRNN
An innovative recurrent neural network implementation for analyzing temporal patterns in neural data. This tool has enabled new insights into taste processing dynamics.
Development Tools
I’ve created several tools to streamline research workflows:
- PR Blog Bot: A sophisticated bot for generating blog posts on pull requests, highlighting updates and new exciting features to our codebase.
- Blech GitHub Bot: An automation tool that has streamlined our lab’s GitHub workflow, saving approximately 5 hours per week in manual tasks.
- Auto Commit: A tool for automatically generating informative git commit messages that has improved our team’s version control practices.
Data Analysis & Visualization
- Video Movement Frequency: A specialized tool for analyzing movement frequency in videos, crucial for behavioral neuroscience research and monitoring vital signs under anesthesia.
- Freq Monitor Streamlit: An interactive frequency monitoring dashboard built with Streamlit, making complex data accessible to non-technical team members.
- PyTau: A Python library for changepoint calculations that has simplified a common analysis task in our research.
Educational & AI Projects
- Teachables: A platform for disseminating educational content that has been used in two graduate-level neuroscience courses.
- NeuRecommend: A classifier for automated/ semi-automated neural data extraction.
- KatzGPT: A specialized GPT-based chatbot for answering questions about taste neuroscience.
- OCR Database: A database system for optical character recognition that has digitized over 1,000 pages of historical research notes.
Collaborate With Me
I’m always looking for collaboration opportunities and feedback on my projects. If you’re interested in working together or have questions about any of these tools, please contact me. I’m particularly interested in partnerships that bridge neuroscience research with cutting-edge technology.